uORF-Tools
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Documentation

  • uORF-Tools

Examples

  • Example workflow
  • Preprocessing workflow
uORF-Tools
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uORF-ToolsΒΆ

Documentation

  • uORF-Tools
    • Introduction
    • Program flowchart
    • Directory table
    • Input/Output Files
      • uORFs_regulation.tsv
    • Tool Parameters
    • Requirements
    • Tools
      • miniconda3
      • snakemake
      • uORF-Tools
    • Input files
      • genome.fa and annotation.gtf
      • input .bam files
      • Sample sheet and configuration file
      • cluster.yaml
    • Example-workflow
    • Preprocessing-workflow
    • References

Examples

  • Example workflow
    • Setup
    • Retrieve and prepare input files
      • Annotation and genome files
      • .bam files
      • Sample sheet and configuration file
    • Running the workflow
      • Run the workflow locally
      • Run Snakemake in a cluster environment
      • Example: Run Snakemake in a cluster environment
      • Report
    • References
  • Preprocessing workflow
    • Setup
    • Retrieve and prepare input files
      • Annotation and genome files
      • Fastq files
        • European Nucleotide Archive (ENA)
      • Sample sheet and configuration file
    • Running the workflow
      • Information about processing parameters
      • Run the workflow locally
      • Run Snakemake in a cluster environment
      • Example: Run Snakemake in a cluster environment
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© Copyright 2018, Rick Gelhausen Revision 6747acc6.

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